J5_4D67_004
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUGGCU*GAUCCUUCGAUGU*GUUUAGA*UUAGUUU
- Length
- 47 nucleotides
- Bulged bases
- 4D67|1|2|A|3875, 4D67|1|2|A|4354, 4D67|1|2|U|4355, 4D67|1|2|G|4408, 4D67|1|2|U|4410, 4D67|1|2|U|4515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4D67|1|2|A|3872
4D67|1|2|G|3873
4D67|1|2|A|3874
4D67|1|2|A|3875
4D67|1|2|G|3876
4D67|1|2|A|3877
4D67|1|2|C|3878
4D67|1|2|C|3879
*
4D67|1|2|G|4352
4D67|1|2|G|4353
4D67|1|2|A|4354
4D67|1|2|U|4355
4D67|1|2|A|4356
4D67|1|2|A|4357
4D67|1|2|C|4358
4D67|1|2|U|4359
4D67|1|2|G|4360
4D67|1|2|G|4361
4D67|1|2|C|4362
4D67|1|2|U|4363
*
4D67|1|2|G|4400
4D67|1|2|A|4401
4D67|1|2|U|4402
4D67|1|2|C|4403
4D67|1|2|C|4404
4D67|1|2|U|4405
4D67|1|2|U|4406
4D67|1|2|C|4407
4D67|1|2|G|4408
4D67|1|2|A|4409
4D67|1|2|U|4410
4D67|1|2|G|4411
4D67|1|2|U|4412
*
4D67|1|2|G|4489
4D67|1|2|U|4490
4D67|1|2|U|4491
4D67|1|2|U|4492
4D67|1|2|A|4493
4D67|1|2|G|4494
4D67|1|2|A|4495
*
4D67|1|2|U|4511
4D67|1|2|U|4512
4D67|1|2|A|4513
4D67|1|2|G|4514
4D67|1|2|U|4515
4D67|1|2|U|4516
4D67|1|2|U|4517
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L8
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain C
- 60S RIBOSOMAL PROTEIN L4
- Chain I
- 60S RIBOSOMAL PROTEIN L10
- Chain P
- 60S RIBOSOMAL PROTEIN L17
- Chain b
- 60S RIBOSOMAL PROTEIN L29
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