J5_4DR4_002

3D structure

PDB id

4DR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

GCAAG*CGGACGGG*CAG*CAC*GGCAGC

Length

25 nucleotides

Bulged bases

4DR4|1|A|A|109, 4DR4|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DR4_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.3887

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DR4|1|A|G|57
4DR4|1|A|C|58
4DR4|1|A|A|59
4DR4|1|A|A|60
4DR4|1|A|G|61
*
4DR4|1|A|C|106
4DR4|1|A|G|107
4DR4|1|A|G|108
4DR4|1|A|A|109
4DR4|1|A|C|110
4DR4|1|A|G|111
4DR4|1|A|G|112
4DR4|1|A|G|113
*
4DR4|1|A|C|314
4DR4|1|A|A|315
4DR4|1|A|G|316
*
4DR4|1|A|C|337
4DR4|1|A|A|338
4DR4|1|A|C|339
*
4DR4|1|A|G|350
4DR4|1|A|G|351
4DR4|1|A|C|352
4DR4|1|A|A|353
4DR4|1|A|G|354
4DR4|1|A|C|355

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20