J5_4DR5_002

3D structure

PDB id

4DR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4DR5|1|A|A|109, 4DR5|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DR5_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.068

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DR5|1|A|C|58
4DR5|1|A|A|59
4DR5|1|A|A|60
4DR5|1|A|G|61
*
4DR5|1|A|C|106
4DR5|1|A|G|107
4DR5|1|A|G|108
4DR5|1|A|A|109
4DR5|1|A|C|110
4DR5|1|A|G|111
4DR5|1|A|G|112
4DR5|1|A|G|113
*
4DR5|1|A|C|314
4DR5|1|A|A|315
4DR5|1|A|G|316
*
4DR5|1|A|C|337
4DR5|1|A|A|338
4DR5|1|A|C|339
*
4DR5|1|A|G|350
4DR5|1|A|G|351
4DR5|1|A|C|352
4DR5|1|A|A|353
4DR5|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20