J5_4DR7_004

3D structure

PDB id

4DR7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4DR7|1|A|A|109, 4DR7|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DR7_004 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0831

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DR7|1|A|C|58
4DR7|1|A|A|59
4DR7|1|A|A|60
4DR7|1|A|G|61
*
4DR7|1|A|C|106
4DR7|1|A|G|107
4DR7|1|A|G|108
4DR7|1|A|A|109
4DR7|1|A|C|110
4DR7|1|A|G|111
4DR7|1|A|G|112
4DR7|1|A|G|113
*
4DR7|1|A|C|314
4DR7|1|A|A|315
4DR7|1|A|G|316
*
4DR7|1|A|C|337
4DR7|1|A|A|338
4DR7|1|A|C|339
*
4DR7|1|A|G|350
4DR7|1|A|G|351
4DR7|1|A|C|352
4DR7|1|A|A|353
4DR7|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20