J5_4DUY_002

3D structure

PDB id

4DUY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4DUY|1|A|A|109, 4DUY|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DUY_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0513

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4DUY|1|A|C|58
4DUY|1|A|A|59
4DUY|1|A|A|60
4DUY|1|A|G|61
*
4DUY|1|A|C|106
4DUY|1|A|G|107
4DUY|1|A|G|108
4DUY|1|A|A|109
4DUY|1|A|C|110
4DUY|1|A|G|111
4DUY|1|A|G|112
4DUY|1|A|G|113
*
4DUY|1|A|C|314
4DUY|1|A|A|315
4DUY|1|A|G|316
*
4DUY|1|A|C|337
4DUY|1|A|A|338
4DUY|1|A|C|339
*
4DUY|1|A|G|350
4DUY|1|A|G|351
4DUY|1|A|C|352
4DUY|1|A|A|353
4DUY|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20