J5_4DUZ_002

3D structure

PDB id

4DUZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4DUZ|1|A|A|109, 4DUZ|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DUZ_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0702

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DUZ|1|A|C|58
4DUZ|1|A|A|59
4DUZ|1|A|A|60
4DUZ|1|A|G|61
*
4DUZ|1|A|C|106
4DUZ|1|A|G|107
4DUZ|1|A|G|108
4DUZ|1|A|A|109
4DUZ|1|A|C|110
4DUZ|1|A|G|111
4DUZ|1|A|G|112
4DUZ|1|A|G|113
*
4DUZ|1|A|C|314
4DUZ|1|A|A|315
4DUZ|1|A|G|316
*
4DUZ|1|A|C|337
4DUZ|1|A|A|338
4DUZ|1|A|C|339
*
4DUZ|1|A|G|350
4DUZ|1|A|G|351
4DUZ|1|A|C|352
4DUZ|1|A|A|353
4DUZ|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20