J5_4DV0_001

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DV0_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0672

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4DV0|1|A|C|36
4DV0|1|A|U|37
4DV0|1|A|G|38
4DV0|1|A|G|39
*
4DV0|1|A|C|403
4DV0|1|A|U|404
4DV0|1|A|U|405
4DV0|1|A|G|406
*
4DV0|1|A|C|436
4DV0|1|A|U|437
4DV0|1|A|G|438
4DV0|1|A|A|439
4DV0|1|A|A|440
4DV0|1|A|C|442
*
4DV0|1|A|G|492
4DV0|1|A|G|494
4DV0|1|A|U|495
4DV0|1|A|A|496
4DV0|1|A|A|497
4DV0|1|A|U|498
4DV0|1|A|A|499
4DV0|1|A|G|500
*
4DV0|1|A|C|545
4DV0|1|A|G|546
4DV0|1|A|A|547
4DV0|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain L

ribosomal protein S12