J5_4DV0_002

3D structure

PDB id

4DV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4DV0|1|A|A|109, 4DV0|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DV0_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0625

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4DV0|1|A|C|58
4DV0|1|A|A|59
4DV0|1|A|A|60
4DV0|1|A|G|61
*
4DV0|1|A|C|106
4DV0|1|A|G|107
4DV0|1|A|G|108
4DV0|1|A|A|109
4DV0|1|A|C|110
4DV0|1|A|G|111
4DV0|1|A|G|112
4DV0|1|A|G|113
*
4DV0|1|A|C|314
4DV0|1|A|A|315
4DV0|1|A|G|316
*
4DV0|1|A|C|337
4DV0|1|A|A|338
4DV0|1|A|C|339
*
4DV0|1|A|G|350
4DV0|1|A|G|351
4DV0|1|A|C|352
4DV0|1|A|A|353
4DV0|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20