J5_4DV1_001

3D structure

PDB id

4DV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U20G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.85 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DV1_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0789

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4DV1|1|A|C|36
4DV1|1|A|U|37
4DV1|1|A|G|38
4DV1|1|A|G|39
*
4DV1|1|A|C|403
4DV1|1|A|U|404
4DV1|1|A|U|405
4DV1|1|A|G|406
*
4DV1|1|A|C|436
4DV1|1|A|U|437
4DV1|1|A|G|438
4DV1|1|A|A|439
4DV1|1|A|A|440
4DV1|1|A|C|442
*
4DV1|1|A|G|492
4DV1|1|A|G|494
4DV1|1|A|U|495
4DV1|1|A|A|496
4DV1|1|A|A|497
4DV1|1|A|U|498
4DV1|1|A|A|499
4DV1|1|A|G|500
*
4DV1|1|A|C|545
4DV1|1|A|G|546
4DV1|1|A|A|547
4DV1|1|A|G|548

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

ribosomal protein S4

Chain L

ribosomal protein S12