3D structure

PDB id
4DV2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, C912A
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
4DV2|1|A|A|109, 4DV2|1|A|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4DV2_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.058
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4DV2|1|A|C|58
4DV2|1|A|A|59
4DV2|1|A|A|60
4DV2|1|A|G|61
*
4DV2|1|A|C|106
4DV2|1|A|G|107
4DV2|1|A|G|108
4DV2|1|A|A|109
4DV2|1|A|C|110
4DV2|1|A|G|111
4DV2|1|A|G|112
4DV2|1|A|G|113
*
4DV2|1|A|C|314
4DV2|1|A|A|315
4DV2|1|A|G|316
*
4DV2|1|A|C|337
4DV2|1|A|A|338
4DV2|1|A|C|339
*
4DV2|1|A|G|350
4DV2|1|A|G|351
4DV2|1|A|C|352
4DV2|1|A|A|353
4DV2|1|A|G|354

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
ribosomal protein S16
Chain T
ribosomal protein S20

Coloring options:


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