J5_4DV4_002

3D structure

PDB id

4DV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4DV4|1|A|A|109, 4DV4|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DV4_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0616

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4DV4|1|A|C|58
4DV4|1|A|A|59
4DV4|1|A|A|60
4DV4|1|A|G|61
*
4DV4|1|A|C|106
4DV4|1|A|G|107
4DV4|1|A|G|108
4DV4|1|A|A|109
4DV4|1|A|C|110
4DV4|1|A|G|111
4DV4|1|A|G|112
4DV4|1|A|G|113
*
4DV4|1|A|C|314
4DV4|1|A|A|315
4DV4|1|A|G|316
*
4DV4|1|A|C|337
4DV4|1|A|A|338
4DV4|1|A|C|339
*
4DV4|1|A|G|350
4DV4|1|A|G|351
4DV4|1|A|C|352
4DV4|1|A|A|353
4DV4|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20