J5_4DV5_002

3D structure

PDB id

4DV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G, bound with streptomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4DV5|1|A|A|109, 4DV5|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4DV5_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0644

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4DV5|1|A|C|58
4DV5|1|A|A|59
4DV5|1|A|A|60
4DV5|1|A|G|61
*
4DV5|1|A|C|106
4DV5|1|A|G|107
4DV5|1|A|G|108
4DV5|1|A|A|109
4DV5|1|A|C|110
4DV5|1|A|G|111
4DV5|1|A|G|112
4DV5|1|A|G|113
*
4DV5|1|A|C|314
4DV5|1|A|A|315
4DV5|1|A|G|316
*
4DV5|1|A|C|337
4DV5|1|A|A|338
4DV5|1|A|C|339
*
4DV5|1|A|G|350
4DV5|1|A|G|351
4DV5|1|A|C|352
4DV5|1|A|A|353
4DV5|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20