J5_4GKJ_001
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4GKJ_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0451
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4GKJ|1|A|C|36
4GKJ|1|A|U|37
4GKJ|1|A|G|38
4GKJ|1|A|G|39
*
4GKJ|1|A|C|398
4GKJ|1|A|U|399
4GKJ|1|A|U|400
4GKJ|1|A|G|401
*
4GKJ|1|A|C|431
4GKJ|1|A|U|432
4GKJ|1|A|G|433
4GKJ|1|A|A|434
4GKJ|1|A|A|435
4GKJ|1|A|C|436
*
4GKJ|1|A|G|476
4GKJ|1|A|G|477
4GKJ|1|A|U|478
4GKJ|1|A|A|479
4GKJ|1|A|A|480
4GKJ|1|A|U|481
4GKJ|1|A|A|482
4GKJ|1|A|G|483
*
4GKJ|1|A|C|528
4GKJ|1|A|G|529
4GKJ|1|A|A|530
4GKJ|1|A|G|531
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain L
- 30S ribosomal protein S12
Coloring options: