J5_4GKJ_002
3D structure
- PDB id
- 4GKJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4GKJ|1|A|A|102, 4GKJ|1|A|C|347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4GKJ_002 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0625
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4GKJ|1|A|C|58
4GKJ|1|A|A|59
4GKJ|1|A|A|60
4GKJ|1|A|G|61
*
4GKJ|1|A|C|99
4GKJ|1|A|G|100
4GKJ|1|A|G|101
4GKJ|1|A|A|102
4GKJ|1|A|C|103
4GKJ|1|A|G|104
4GKJ|1|A|G|105
4GKJ|1|A|G|106
*
4GKJ|1|A|C|309
4GKJ|1|A|A|310
4GKJ|1|A|G|311
*
4GKJ|1|A|C|332
4GKJ|1|A|A|333
4GKJ|1|A|C|334
*
4GKJ|1|A|G|345
4GKJ|1|A|G|346
4GKJ|1|A|C|347
4GKJ|1|A|A|348
4GKJ|1|A|G|349
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
Coloring options: