3D structure

PDB id
4GKK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4GKK_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0508
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4GKK|1|A|C|36
4GKK|1|A|U|37
4GKK|1|A|G|38
4GKK|1|A|G|39
*
4GKK|1|A|C|398
4GKK|1|A|U|399
4GKK|1|A|U|400
4GKK|1|A|G|401
*
4GKK|1|A|C|431
4GKK|1|A|U|432
4GKK|1|A|G|433
4GKK|1|A|A|434
4GKK|1|A|A|435
4GKK|1|A|C|436
*
4GKK|1|A|G|476
4GKK|1|A|G|477
4GKK|1|A|U|478
4GKK|1|A|A|479
4GKK|1|A|A|480
4GKK|1|A|U|481
4GKK|1|A|A|482
4GKK|1|A|G|483
*
4GKK|1|A|C|528
4GKK|1|A|G|529
4GKK|1|A|A|530
4GKK|1|A|G|531

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
30S ribosomal protein S4
Chain L
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3901 s
Application loaded.