J5_4GKK_002

3D structure

PDB id

4GKK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4GKK|1|A|A|102, 4GKK|1|A|C|347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4GKK_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0559

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4GKK|1|A|C|58
4GKK|1|A|A|59
4GKK|1|A|A|60
4GKK|1|A|G|61
*
4GKK|1|A|C|99
4GKK|1|A|G|100
4GKK|1|A|G|101
4GKK|1|A|A|102
4GKK|1|A|C|103
4GKK|1|A|G|104
4GKK|1|A|G|105
4GKK|1|A|G|106
*
4GKK|1|A|C|309
4GKK|1|A|A|310
4GKK|1|A|G|311
*
4GKK|1|A|C|332
4GKK|1|A|A|333
4GKK|1|A|C|334
*
4GKK|1|A|G|345
4GKK|1|A|G|346
4GKK|1|A|C|347
4GKK|1|A|A|348
4GKK|1|A|G|349

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20