J5_4IOA_003

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGACUU*AGAC*GUUC*GC*GCGGAUG

Length

23 nucleotides

Bulged bases

4IOA|1|X|U|1268

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.1

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4IOA|1|X|C|593
4IOA|1|X|G|594
4IOA|1|X|A|595
4IOA|1|X|C|596
4IOA|1|X|U|597
4IOA|1|X|U|598
*
4IOA|1|X|A|681
4IOA|1|X|G|682
4IOA|1|X|A|683
4IOA|1|X|C|684
*
4IOA|1|X|G|822
4IOA|1|X|U|823
4IOA|1|X|U|824
4IOA|1|X|C|825
*
4IOA|1|X|G|1209
4IOA|1|X|C|1210
*
4IOA|1|X|G|1263
4IOA|1|X|C|1264
4IOA|1|X|G|1265
4IOA|1|X|G|1266
4IOA|1|X|A|1267
4IOA|1|X|U|1268
4IOA|1|X|G|1269

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21