3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GCAAUCUCA*UC*GC*GUGAAUAGG*CGC
Length
25 nucleotides
Bulged bases
4IOA|1|X|G|1749, 4IOA|1|X|G|1754
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
6

Unit IDs

4IOA|1|X|G|1691
4IOA|1|X|C|1692
4IOA|1|X|A|1693
4IOA|1|X|A|1694
4IOA|1|X|U|1695
4IOA|1|X|C|1696
4IOA|1|X|U|1697
4IOA|1|X|C|1698
4IOA|1|X|A|1699
*
4IOA|1|X|U|1723
4IOA|1|X|C|1724
*
4IOA|1|X|G|1742
4IOA|1|X|C|1743
*
4IOA|1|X|G|1747
4IOA|1|X|U|1748
4IOA|1|X|G|1749
4IOA|1|X|A|1750
4IOA|1|X|A|1751
4IOA|1|X|U|1752
4IOA|1|X|A|1753
4IOA|1|X|G|1754
4IOA|1|X|G|1755
*
4IOA|1|X|C|1971
4IOA|1|X|G|1972
4IOA|1|X|C|1973

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain H
50S ribosomal protein L14
Chain M
50S ribosomal protein L19

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1673 s