J5_4IOA_004

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCAAUCUCA*UC*GC*GUGAAUAGG*CGC

Length

25 nucleotides

Bulged bases

4IOA|1|X|G|1749, 4IOA|1|X|G|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|G|1691
4IOA|1|X|C|1692
4IOA|1|X|A|1693
4IOA|1|X|A|1694
4IOA|1|X|U|1695
4IOA|1|X|C|1696
4IOA|1|X|U|1697
4IOA|1|X|C|1698
4IOA|1|X|A|1699
*
4IOA|1|X|U|1723
4IOA|1|X|C|1724
*
4IOA|1|X|G|1742
4IOA|1|X|C|1743
*
4IOA|1|X|G|1747
4IOA|1|X|U|1748
4IOA|1|X|G|1749
4IOA|1|X|A|1750
4IOA|1|X|A|1751
4IOA|1|X|U|1752
4IOA|1|X|A|1753
4IOA|1|X|G|1754
4IOA|1|X|G|1755
*
4IOA|1|X|C|1971
4IOA|1|X|G|1972
4IOA|1|X|C|1973

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19