J5_4JI1_002

3D structure

PDB id

4JI1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4JI1|1|A|A|60, 4JI1|1|A|A|109, 4JI1|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4JI1_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0452

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4JI1|1|A|C|58
4JI1|1|A|A|59
4JI1|1|A|A|60
4JI1|1|A|G|61
*
4JI1|1|A|C|106
4JI1|1|A|G|107
4JI1|1|A|G|108
4JI1|1|A|A|109
4JI1|1|A|C|110
4JI1|1|A|G|111
4JI1|1|A|G|112
4JI1|1|A|G|113
*
4JI1|1|A|C|314
4JI1|1|A|A|315
4JI1|1|A|G|316
*
4JI1|1|A|C|337
4JI1|1|A|A|338
4JI1|1|A|C|339
*
4JI1|1|A|G|350
4JI1|1|A|G|351
4JI1|1|A|C|352
4JI1|1|A|A|353
4JI1|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20