J5_4JI4_002

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4JI4|1|A|A|109, 4JI4|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4JI4_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0704

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4JI4|1|A|C|58
4JI4|1|A|A|59
4JI4|1|A|A|60
4JI4|1|A|G|61
*
4JI4|1|A|C|106
4JI4|1|A|G|107
4JI4|1|A|G|108
4JI4|1|A|A|109
4JI4|1|A|C|110
4JI4|1|A|G|111
4JI4|1|A|G|112
4JI4|1|A|G|113
*
4JI4|1|A|C|314
4JI4|1|A|A|315
4JI4|1|A|G|316
*
4JI4|1|A|C|337
4JI4|1|A|A|338
4JI4|1|A|C|339
*
4JI4|1|A|G|350
4JI4|1|A|G|351
4JI4|1|A|C|352
4JI4|1|A|A|353
4JI4|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

RIBOSOMAL PROTEIN S16

Chain T

RIBOSOMAL PROTEIN S20