J5_4JYA_002

3D structure

PDB id

4JYA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4JYA|1|A|A|103, 4JYA|1|A|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4JYA_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.048

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4JYA|1|A|C|59
4JYA|1|A|A|60
4JYA|1|A|A|61
4JYA|1|A|G|62
*
4JYA|1|A|C|100
4JYA|1|A|G|101
4JYA|1|A|G|102
4JYA|1|A|A|103
4JYA|1|A|C|104
4JYA|1|A|G|105
4JYA|1|A|G|106
4JYA|1|A|G|107
*
4JYA|1|A|C|310
4JYA|1|A|A|311
4JYA|1|A|G|312
*
4JYA|1|A|C|333
4JYA|1|A|A|334
4JYA|1|A|C|335
*
4JYA|1|A|G|346
4JYA|1|A|G|347
4JYA|1|A|C|348
4JYA|1|A|A|349
4JYA|1|A|G|350

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20