J5_4KHP_001
3D structure
- PDB id
- 4KHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4KHP_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0518
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
4KHP|1|A|C|37
4KHP|1|A|U|38
4KHP|1|A|G|39
4KHP|1|A|G|40
*
4KHP|1|A|C|399
4KHP|1|A|U|400
4KHP|1|A|U|401
4KHP|1|A|G|402
*
4KHP|1|A|C|432
4KHP|1|A|U|433
4KHP|1|A|G|434
4KHP|1|A|A|435
4KHP|1|A|A|436
4KHP|1|A|C|437
*
4KHP|1|A|G|477
4KHP|1|A|G|478
4KHP|1|A|U|479
4KHP|1|A|A|480
4KHP|1|A|A|481
4KHP|1|A|U|482
4KHP|1|A|A|483
4KHP|1|A|G|484
*
4KHP|1|A|C|529
4KHP|1|A|G|530
4KHP|1|A|A|531
4KHP|1|A|G|532
Current chains
- Chain A
- 16S Ribosomal RNA
Nearby chains
- Chain D
- 30S Ribosomal protein S4
- Chain L
- 30S Ribosomal protein S12
Coloring options: