J5_4KHP_002

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4KHP|1|A|A|103, 4KHP|1|A|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4KHP_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0636

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4KHP|1|A|C|59
4KHP|1|A|A|60
4KHP|1|A|A|61
4KHP|1|A|G|62
*
4KHP|1|A|C|100
4KHP|1|A|G|101
4KHP|1|A|G|102
4KHP|1|A|A|103
4KHP|1|A|C|104
4KHP|1|A|G|105
4KHP|1|A|G|106
4KHP|1|A|G|107
*
4KHP|1|A|C|310
4KHP|1|A|A|311
4KHP|1|A|G|312
*
4KHP|1|A|C|333
4KHP|1|A|A|334
4KHP|1|A|C|335
*
4KHP|1|A|G|346
4KHP|1|A|G|347
4KHP|1|A|C|348
4KHP|1|A|A|349
4KHP|1|A|G|350

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain P

30S Ribosomal protein S16

Chain T

30S Ribosomal protein S20