J5_4KZZ_002
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4KZZ|1|i|U|55, 4KZZ|1|i|A|92, 4KZZ|1|i|C|462
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4KZZ_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1083
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
4KZZ|1|i|C|53
4KZZ|1|i|A|54
4KZZ|1|i|U|55
4KZZ|1|i|G|56
*
4KZZ|1|i|C|89
4KZZ|1|i|G|90
4KZZ|1|i|A|91
4KZZ|1|i|A|92
4KZZ|1|i|U|93
4KZZ|1|i|G|94
4KZZ|1|i|G|95
4KZZ|1|i|C|96
*
4KZZ|1|i|G|424
4KZZ|1|i|A|425
4KZZ|1|i|G|426
*
4KZZ|1|i|C|447
4KZZ|1|i|A|448
4KZZ|1|i|C|449
*
4KZZ|1|i|G|460
4KZZ|1|i|G|461
4KZZ|1|i|C|462
4KZZ|1|i|A|463
4KZZ|1|i|G|464
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain E
- 40S Ribosomal Protein S4X
- Chain G
- 40S Ribosomal Protein S6
- Chain I
- 40S Ribosomal Protein S8
- Chain Y
- 40S Ribosomal Protein S24
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