J5_4L47_010

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4L47_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0749

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4L47|1|XA|C|36
4L47|1|XA|U|37
4L47|1|XA|G|38
4L47|1|XA|G|39
*
4L47|1|XA|C|403
4L47|1|XA|U|404
4L47|1|XA|U|405
4L47|1|XA|G|406
*
4L47|1|XA|C|436
4L47|1|XA|U|437
4L47|1|XA|G|438
4L47|1|XA|A|439
4L47|1|XA|A|440
4L47|1|XA|C|442
*
4L47|1|XA|G|492
4L47|1|XA|G|493
4L47|1|XA|U|494
4L47|1|XA|A|495
4L47|1|XA|A|496
4L47|1|XA|U|497
4L47|1|XA|A|498
4L47|1|XA|G|500
*
4L47|1|XA|C|545
4L47|1|XA|G|546
4L47|1|XA|A|547
4L47|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12