J5_4L71_001

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4L71_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0828

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4L71|1|QA|C|36
4L71|1|QA|U|37
4L71|1|QA|G|38
4L71|1|QA|G|39
*
4L71|1|QA|C|403
4L71|1|QA|U|404
4L71|1|QA|U|405
4L71|1|QA|G|406
*
4L71|1|QA|C|436
4L71|1|QA|U|437
4L71|1|QA|G|438
4L71|1|QA|A|439
4L71|1|QA|A|440
4L71|1|QA|C|442
*
4L71|1|QA|G|492
4L71|1|QA|G|493
4L71|1|QA|U|494
4L71|1|QA|A|495
4L71|1|QA|A|496
4L71|1|QA|U|497
4L71|1|QA|A|498
4L71|1|QA|G|500
*
4L71|1|QA|C|545
4L71|1|QA|G|546
4L71|1|QA|A|547
4L71|1|QA|G|548

Current chains

Chain QA

16S Ribosomal RNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9