J5_4LEL_010

3D structure

PDB id

4LEL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4LEL_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0861

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4LEL|1|XA|C|36
4LEL|1|XA|U|37
4LEL|1|XA|G|38
4LEL|1|XA|G|39
*
4LEL|1|XA|C|403
4LEL|1|XA|U|404
4LEL|1|XA|U|405
4LEL|1|XA|G|406
*
4LEL|1|XA|C|436
4LEL|1|XA|U|437
4LEL|1|XA|G|438
4LEL|1|XA|A|439
4LEL|1|XA|A|440
4LEL|1|XA|C|442
*
4LEL|1|XA|G|492
4LEL|1|XA|G|493
4LEL|1|XA|U|494
4LEL|1|XA|A|495
4LEL|1|XA|A|496
4LEL|1|XA|U|497
4LEL|1|XA|A|498
4LEL|1|XA|G|500
*
4LEL|1|XA|C|545
4LEL|1|XA|G|546
4LEL|1|XA|A|547
4LEL|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12