3D structure

PDB id
4LEL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
4LEL|1|YA|G|1758, 4LEL|1|YA|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4LEL_016 not in the Motif Atlas
Homologous match to J5_7A0S_005
Geometric discrepancy: 0.0943
The information below is about J5_7A0S_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4LEL|1|YA|G|1674
4LEL|1|YA|C|1675
4LEL|1|YA|A|1676
4LEL|1|YA|A|1677
4LEL|1|YA|G|1678
4LEL|1|YA|U|1679
4LEL|1|YA|U|1680
4LEL|1|YA|G|1681
4LEL|1|YA|G|1682
*
4LEL|1|YA|U|1706
4LEL|1|YA|G|1707
*
4LEL|1|YA|C|1751
4LEL|1|YA|C|1752
*
4LEL|1|YA|G|1756
4LEL|1|YA|U|1757
4LEL|1|YA|G|1758
4LEL|1|YA|A|1759
4LEL|1|YA|A|1760
4LEL|1|YA|C|1761
4LEL|1|YA|A|1762
4LEL|1|YA|G|1763
4LEL|1|YA|G|1764
*
4LEL|1|YA|C|1988
4LEL|1|YA|G|1989
4LEL|1|YA|C|1990

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YE
50S ribosomal protein L3
Chain YO
50S ribosomal protein L14
Chain YT
50S ribosomal protein L19

Coloring options:


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