J5_4LFA_004

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

4LFA|1|A|A|109, 4LFA|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4LFA_004 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0528

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4LFA|1|A|C|58
4LFA|1|A|A|59
4LFA|1|A|A|60
4LFA|1|A|G|61
*
4LFA|1|A|C|106
4LFA|1|A|G|107
4LFA|1|A|G|108
4LFA|1|A|A|109
4LFA|1|A|C|110
4LFA|1|A|G|111
4LFA|1|A|G|112
4LFA|1|A|G|113
*
4LFA|1|A|C|314
4LFA|1|A|A|315
4LFA|1|A|G|316
*
4LFA|1|A|C|337
4LFA|1|A|A|338
4LFA|1|A|C|339
*
4LFA|1|A|G|350
4LFA|1|A|G|351
4LFA|1|A|C|352
4LFA|1|A|A|353
4LFA|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

ribosomal protein S16

Chain T

ribosomal protein S20