3D structure

PDB id
4LFC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4LFC_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0503
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

4LFC|1|A|C|36
4LFC|1|A|U|37
4LFC|1|A|G|38
4LFC|1|A|G|39
*
4LFC|1|A|C|403
4LFC|1|A|U|404
4LFC|1|A|U|405
4LFC|1|A|G|406
*
4LFC|1|A|C|436
4LFC|1|A|U|437
4LFC|1|A|G|438
4LFC|1|A|A|439
4LFC|1|A|A|440
4LFC|1|A|C|442
*
4LFC|1|A|G|492
4LFC|1|A|G|494
4LFC|1|A|U|495
4LFC|1|A|A|496
4LFC|1|A|A|497
4LFC|1|A|U|498
4LFC|1|A|A|499
4LFC|1|A|G|500
*
4LFC|1|A|C|545
4LFC|1|A|G|546
4LFC|1|A|A|547
4LFC|1|A|G|548

Current chains

Chain A
16S rRNA

Nearby chains

Chain D
ribosomal protein S4
Chain L
ribosomal protein S12

Coloring options:


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