J5_4LFZ_001

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4LFZ_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.081

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4LFZ|1|QA|C|36
4LFZ|1|QA|U|37
4LFZ|1|QA|G|38
4LFZ|1|QA|G|39
*
4LFZ|1|QA|C|403
4LFZ|1|QA|U|404
4LFZ|1|QA|U|405
4LFZ|1|QA|G|406
*
4LFZ|1|QA|C|436
4LFZ|1|QA|U|437
4LFZ|1|QA|G|438
4LFZ|1|QA|A|439
4LFZ|1|QA|A|440
4LFZ|1|QA|C|442
*
4LFZ|1|QA|G|492
4LFZ|1|QA|G|493
4LFZ|1|QA|U|494
4LFZ|1|QA|A|495
4LFZ|1|QA|A|496
4LFZ|1|QA|U|497
4LFZ|1|QA|A|498
4LFZ|1|QA|G|500
*
4LFZ|1|QA|C|545
4LFZ|1|QA|G|546
4LFZ|1|QA|A|547
4LFZ|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9