3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
UUUA*UUUG*CG*CG*CGGAUAAAA
Length
21 nucleotides
Bulged bases
4LFZ|1|RA|U|2076, 4LFZ|1|RA|G|2428, 4LFZ|1|RA|G|2429, 4LFZ|1|RA|A|2430, 4LFZ|1|RA|U|2431
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4LFZ_008 not in the Motif Atlas
Homologous match to J5_9DFE_007
Geometric discrepancy: 0.096
The information below is about J5_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_39529.1
Basepair signature
cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
3

Unit IDs

4LFZ|1|RA|U|2074
4LFZ|1|RA|U|2075
4LFZ|1|RA|U|2076
4LFZ|1|RA|A|2077
*
4LFZ|1|RA|U|2243
4LFZ|1|RA|U|2244
4LFZ|1|RA|U|2245
4LFZ|1|RA|G|2246
*
4LFZ|1|RA|C|2258
4LFZ|1|RA|G|2259
*
4LFZ|1|RA|C|2281
4LFZ|1|RA|G|2282
*
4LFZ|1|RA|C|2427
4LFZ|1|RA|G|2428
4LFZ|1|RA|G|2429
4LFZ|1|RA|A|2430
4LFZ|1|RA|U|2431
4LFZ|1|RA|A|2432
4LFZ|1|RA|A|2433
4LFZ|1|RA|A|2434
4LFZ|1|RA|A|2435

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R0
50S ribosomal protein L27
Chain R1
50S ribosomal protein L28
Chain R6
50S ribosomal protein L33
Chain RD
50S ribosomal protein L2
Chain RP
50S ribosomal protein L15

Coloring options:


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