3D structure

PDB id
4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.92 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
4LFZ|1|XA|A|109, 4LFZ|1|XA|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4LFZ_010 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.1003
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4LFZ|1|XA|C|58
4LFZ|1|XA|A|59
4LFZ|1|XA|A|60
4LFZ|1|XA|G|61
*
4LFZ|1|XA|C|106
4LFZ|1|XA|G|107
4LFZ|1|XA|G|108
4LFZ|1|XA|A|109
4LFZ|1|XA|C|110
4LFZ|1|XA|G|111
4LFZ|1|XA|G|112
4LFZ|1|XA|G|113
*
4LFZ|1|XA|C|314
4LFZ|1|XA|A|315
4LFZ|1|XA|G|316
*
4LFZ|1|XA|C|337
4LFZ|1|XA|A|338
4LFZ|1|XA|C|339
*
4LFZ|1|XA|G|350
4LFZ|1|XA|G|351
4LFZ|1|XA|C|352
4LFZ|1|XA|A|353
4LFZ|1|XA|G|354

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XP
30S ribosomal protein S16
Chain XT
30S ribosomal protein S20
Chain YO
50S ribosomal protein L14
Chain YT
50S ribosomal protein L19

Coloring options:


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