J5_4LNT_011

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4LNT_011 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0696

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4LNT|1|XA|C|36
4LNT|1|XA|U|37
4LNT|1|XA|G|38
4LNT|1|XA|G|39
*
4LNT|1|XA|C|403
4LNT|1|XA|U|404
4LNT|1|XA|U|405
4LNT|1|XA|G|406
*
4LNT|1|XA|C|436
4LNT|1|XA|U|437
4LNT|1|XA|G|438
4LNT|1|XA|A|439
4LNT|1|XA|A|440
4LNT|1|XA|C|442
*
4LNT|1|XA|G|492
4LNT|1|XA|G|493
4LNT|1|XA|U|494
4LNT|1|XA|A|495
4LNT|1|XA|A|496
4LNT|1|XA|U|497
4LNT|1|XA|A|498
4LNT|1|XA|G|500
*
4LNT|1|XA|C|545
4LNT|1|XA|G|546
4LNT|1|XA|A|547
4LNT|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12