3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
4LSK|1|QA|A|109, 4LSK|1|QA|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4LSK_002 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0851
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

4LSK|1|QA|C|58
4LSK|1|QA|A|59
4LSK|1|QA|A|60
4LSK|1|QA|G|61
*
4LSK|1|QA|C|106
4LSK|1|QA|G|107
4LSK|1|QA|G|108
4LSK|1|QA|A|109
4LSK|1|QA|C|110
4LSK|1|QA|G|111
4LSK|1|QA|G|112
4LSK|1|QA|G|113
*
4LSK|1|QA|C|314
4LSK|1|QA|A|315
4LSK|1|QA|G|316
*
4LSK|1|QA|C|337
4LSK|1|QA|A|338
4LSK|1|QA|C|339
*
4LSK|1|QA|G|350
4LSK|1|QA|G|351
4LSK|1|QA|C|352
4LSK|1|QA|A|353
4LSK|1|QA|G|354

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QP
30S ribosomal protein S16
Chain QT
30S ribosomal protein S20
Chain RO
50S ribosomal protein L14
Chain RT
50S ribosomal protein L19

Coloring options:


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