3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
4LSK|1|RA|G|1758, 4LSK|1|RA|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4LSK_007 not in the Motif Atlas
Homologous match to J5_7A0S_005
Geometric discrepancy: 0.0951
The information below is about J5_7A0S_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4LSK|1|RA|G|1674
4LSK|1|RA|C|1675
4LSK|1|RA|A|1676
4LSK|1|RA|A|1677
4LSK|1|RA|G|1678
4LSK|1|RA|U|1679
4LSK|1|RA|U|1680
4LSK|1|RA|G|1681
4LSK|1|RA|G|1682
*
4LSK|1|RA|U|1706
4LSK|1|RA|G|1707
*
4LSK|1|RA|C|1751
4LSK|1|RA|C|1752
*
4LSK|1|RA|G|1756
4LSK|1|RA|U|1757
4LSK|1|RA|G|1758
4LSK|1|RA|A|1759
4LSK|1|RA|A|1760
4LSK|1|RA|C|1761
4LSK|1|RA|A|1762
4LSK|1|RA|G|1763
4LSK|1|RA|G|1764
*
4LSK|1|RA|C|1988
4LSK|1|RA|G|1989
4LSK|1|RA|C|1990

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RE
50S ribosomal protein L3
Chain RO
50S ribosomal protein L14
Chain RT
50S ribosomal protein L19

Coloring options:


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