J5_4LSK_015

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GC*GCGAAUG

Length

23 nucleotides

Bulged bases

4LSK|1|YA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4LSK_015 not in the Motif Atlas

Homologous match to J5_9DFE_004

Geometric discrepancy: 0.0789

The information below is about J5_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_74302.5

Basepair signature

cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4LSK|1|YA|C|584
4LSK|1|YA|G|585
4LSK|1|YA|A|586
4LSK|1|YA|C|587
4LSK|1|YA|U|588
4LSK|1|YA|C|589
*
4LSK|1|YA|G|668
4LSK|1|YA|G|669
4LSK|1|YA|A|670
4LSK|1|YA|C|671
*
4LSK|1|YA|G|809
4LSK|1|YA|U|810
4LSK|1|YA|U|811
4LSK|1|YA|C|812
*
4LSK|1|YA|G|1195
4LSK|1|YA|C|1196
*
4LSK|1|YA|G|1250
4LSK|1|YA|C|1251
4LSK|1|YA|G|1252
4LSK|1|YA|A|1253
4LSK|1|YA|A|1254
4LSK|1|YA|U|1255
4LSK|1|YA|G|1256

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y8

50S ribosomal protein L35

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15

Chain YU

50S ribosomal protein L20

Chain YV

50S ribosomal protein L21