J5_9DFE_004
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 9DFE|1|1A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9DFE|1|1A|C|584
9DFE|1|1A|G|585
9DFE|1|1A|A|586
9DFE|1|1A|C|587
9DFE|1|1A|U|588
9DFE|1|1A|C|589
*
9DFE|1|1A|G|668
9DFE|1|1A|G|669
9DFE|1|1A|A|670
9DFE|1|1A|C|671
*
9DFE|1|1A|G|809
9DFE|1|1A|U|810
9DFE|1|1A|U|811
9DFE|1|1A|C|812
*
9DFE|1|1A|G|1195
9DFE|1|1A|C|1196
*
9DFE|1|1A|G|1250
9DFE|1|1A|C|1251
9DFE|1|1A|G|1252
9DFE|1|1A|A|1253
9DFE|1|1A|A|1254
9DFE|1|1A|U|1255
9DFE|1|1A|G|1256
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 18
- 50S ribosomal protein L35
- Chain 1F
- 50S ribosomal protein L4
- Chain 1P
- 50S ribosomal protein L15
- Chain 1U
- 50S ribosomal protein L20
- Chain 1V
- 50S ribosomal protein L21
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