J5_4LT8_001

3D structure

PDB id

4LT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4LT8_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0852

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4LT8|1|QA|C|36
4LT8|1|QA|U|37
4LT8|1|QA|G|38
4LT8|1|QA|G|39
*
4LT8|1|QA|C|403
4LT8|1|QA|U|404
4LT8|1|QA|U|405
4LT8|1|QA|G|406
*
4LT8|1|QA|C|436
4LT8|1|QA|U|437
4LT8|1|QA|G|438
4LT8|1|QA|A|439
4LT8|1|QA|A|440
4LT8|1|QA|C|442
*
4LT8|1|QA|G|492
4LT8|1|QA|G|493
4LT8|1|QA|U|494
4LT8|1|QA|A|495
4LT8|1|QA|A|496
4LT8|1|QA|U|497
4LT8|1|QA|A|498
4LT8|1|QA|G|500
*
4LT8|1|QA|C|545
4LT8|1|QA|G|546
4LT8|1|QA|A|547
4LT8|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9