J5_4P6F_010

3D structure

PDB id

4P6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the peptolide 12C bound to bacterial ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4P6F_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0685

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4P6F|1|XA|C|36
4P6F|1|XA|U|37
4P6F|1|XA|G|38
4P6F|1|XA|G|39
*
4P6F|1|XA|C|403
4P6F|1|XA|U|404
4P6F|1|XA|U|405
4P6F|1|XA|G|406
*
4P6F|1|XA|C|436
4P6F|1|XA|U|437
4P6F|1|XA|G|438
4P6F|1|XA|A|439
4P6F|1|XA|A|440
4P6F|1|XA|C|442
*
4P6F|1|XA|G|492
4P6F|1|XA|G|493
4P6F|1|XA|U|494
4P6F|1|XA|A|495
4P6F|1|XA|A|496
4P6F|1|XA|U|497
4P6F|1|XA|A|498
4P6F|1|XA|G|500
*
4P6F|1|XA|C|545
4P6F|1|XA|G|546
4P6F|1|XA|A|547
4P6F|1|XA|G|548

Current chains

Chain XA

16S ribosomal RNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12