J5_4P70_010

3D structure

PDB id

4P70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4P70_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0849

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4P70|1|XA|C|36
4P70|1|XA|U|37
4P70|1|XA|G|38
4P70|1|XA|G|39
*
4P70|1|XA|C|403
4P70|1|XA|U|404
4P70|1|XA|U|405
4P70|1|XA|G|406
*
4P70|1|XA|C|436
4P70|1|XA|U|437
4P70|1|XA|G|438
4P70|1|XA|A|439
4P70|1|XA|A|440
4P70|1|XA|C|442
*
4P70|1|XA|G|492
4P70|1|XA|G|493
4P70|1|XA|U|494
4P70|1|XA|A|495
4P70|1|XA|A|496
4P70|1|XA|U|497
4P70|1|XA|A|498
4P70|1|XA|G|500
*
4P70|1|XA|C|545
4P70|1|XA|G|546
4P70|1|XA|A|547
4P70|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12