J5_4TUB_007
3D structure
- PDB id
- 4TUB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GCAAGUUGG*UG*CC*GUGAACAGG*CGC
- Length
- 25 nucleotides
- Bulged bases
- 4TUB|1|RA|G|1789, 4TUB|1|RA|G|1794
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4TUB_007 not in the Motif Atlas
- Homologous match to J5_9DFE_005
- Geometric discrepancy: 0.0841
- The information below is about J5_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4TUB|1|RA|G|1721
4TUB|1|RA|C|1722
4TUB|1|RA|A|1723
4TUB|1|RA|A|1724
4TUB|1|RA|G|1725
4TUB|1|RA|U|1726
4TUB|1|RA|U|1727
4TUB|1|RA|G|1728
4TUB|1|RA|G|1729
*
4TUB|1|RA|U|1753
4TUB|1|RA|G|1754
*
4TUB|1|RA|C|1782
4TUB|1|RA|C|1783
*
4TUB|1|RA|G|1787
4TUB|1|RA|U|1788
4TUB|1|RA|G|1789
4TUB|1|RA|A|1790
4TUB|1|RA|A|1791
4TUB|1|RA|C|1792
4TUB|1|RA|A|1793
4TUB|1|RA|G|1794
4TUB|1|RA|G|1795
*
4TUB|1|RA|C|2010
4TUB|1|RA|G|2011
4TUB|1|RA|C|2012
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain QA
- Small subunit ribosomal RNA; SSU rRNA
- Chain RE
- 50S ribosomal protein L3
- Chain RO
- 50S ribosomal protein L14
- Chain RT
- 50S ribosomal protein L19
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