3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GCAAGUUGG*UG*CC*GUGAACAGG*CGC
Length
25 nucleotides
Bulged bases
4TUB|1|YA|G|1758, 4TUB|1|YA|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4TUB_017 not in the Motif Atlas
Homologous match to J5_9DFE_005
Geometric discrepancy: 0.087
The information below is about J5_9DFE_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4TUB|1|YA|G|1674
4TUB|1|YA|C|1675
4TUB|1|YA|A|1676
4TUB|1|YA|A|1677
4TUB|1|YA|G|1678
4TUB|1|YA|U|1679
4TUB|1|YA|U|1680
4TUB|1|YA|G|1681
4TUB|1|YA|G|1682
*
4TUB|1|YA|U|1706
4TUB|1|YA|G|1707
*
4TUB|1|YA|C|1751
4TUB|1|YA|C|1752
*
4TUB|1|YA|G|1756
4TUB|1|YA|U|1757
4TUB|1|YA|G|1758
4TUB|1|YA|A|1759
4TUB|1|YA|A|1760
4TUB|1|YA|C|1761
4TUB|1|YA|A|1762
4TUB|1|YA|G|1763
4TUB|1|YA|G|1764
*
4TUB|1|YA|C|1988
4TUB|1|YA|G|1989
4TUB|1|YA|C|1990

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YE
50S ribosomal protein L3
Chain YO
50S ribosomal protein L14
Chain YT
50S ribosomal protein L19

Coloring options:


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