J5_4TUC_003

3D structure

PDB id

4TUC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4TUC|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4TUC_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0712

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4TUC|1|RA|C|47
4TUC|1|RA|G|48
4TUC|1|RA|A|49
4TUC|1|RA|U|50
4TUC|1|RA|G|51
4TUC|1|RA|A|52
4TUC|1|RA|A|53
4TUC|1|RA|G|54
*
4TUC|1|RA|C|116
4TUC|1|RA|G|117
4TUC|1|RA|A|118
4TUC|1|RA|A|119
4TUC|1|RA|U|120
4TUC|1|RA|G|121
*
4TUC|1|RA|C|130
4TUC|1|RA|G|131
*
4TUC|1|RA|C|148
4TUC|1|RA|A|149
4TUC|1|RA|C|150
*
4TUC|1|RA|G|176
4TUC|1|RA|G|177
4TUC|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23