J5_9DFE_001

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

9DFE|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9DFE|1|1A|C|47
9DFE|1|1A|G|48
9DFE|1|1A|A|49
9DFE|1|1A|U|50
9DFE|1|1A|G|51
9DFE|1|1A|A|52
9DFE|1|1A|A|53
9DFE|1|1A|G|54
*
9DFE|1|1A|C|116
9DFE|1|1A|G|117
9DFE|1|1A|A|118
9DFE|1|1A|A|119
9DFE|1|1A|U|120
9DFE|1|1A|G|121
*
9DFE|1|1A|C|130
9DFE|1|1A|G|131
*
9DFE|1|1A|C|148
9DFE|1|1A|A|149
9DFE|1|1A|C|150
*
9DFE|1|1A|G|176
9DFE|1|1A|G|177
9DFE|1|1A|G|178

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23