J5_4TUD_010

3D structure

PDB id

4TUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4TUD_010 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0638

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4TUD|1|XA|C|36
4TUD|1|XA|U|37
4TUD|1|XA|G|38
4TUD|1|XA|G|39
*
4TUD|1|XA|C|403
4TUD|1|XA|U|404
4TUD|1|XA|U|405
4TUD|1|XA|G|406
*
4TUD|1|XA|C|436
4TUD|1|XA|U|437
4TUD|1|XA|G|438
4TUD|1|XA|A|439
4TUD|1|XA|A|440
4TUD|1|XA|C|442
*
4TUD|1|XA|G|492
4TUD|1|XA|G|493
4TUD|1|XA|U|494
4TUD|1|XA|A|495
4TUD|1|XA|A|496
4TUD|1|XA|U|497
4TUD|1|XA|A|498
4TUD|1|XA|G|500
*
4TUD|1|XA|C|545
4TUD|1|XA|G|546
4TUD|1|XA|A|547
4TUD|1|XA|G|548

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12