J5_4TUE_001

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4TUE_001 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0701

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4TUE|1|QA|C|36
4TUE|1|QA|U|37
4TUE|1|QA|G|38
4TUE|1|QA|G|39
*
4TUE|1|QA|C|403
4TUE|1|QA|U|404
4TUE|1|QA|U|405
4TUE|1|QA|G|406
*
4TUE|1|QA|C|436
4TUE|1|QA|U|437
4TUE|1|QA|G|438
4TUE|1|QA|A|439
4TUE|1|QA|A|440
4TUE|1|QA|C|442
*
4TUE|1|QA|G|492
4TUE|1|QA|G|493
4TUE|1|QA|U|494
4TUE|1|QA|A|495
4TUE|1|QA|A|496
4TUE|1|QA|U|497
4TUE|1|QA|A|498
4TUE|1|QA|G|500
*
4TUE|1|QA|C|545
4TUE|1|QA|G|546
4TUE|1|QA|A|547
4TUE|1|QA|G|548

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12

Chain YI

50S ribosomal protein L9