J5_4TUE_003

3D structure

PDB id

4TUE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4TUE|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4TUE_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0722

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4TUE|1|RA|C|47
4TUE|1|RA|G|48
4TUE|1|RA|A|49
4TUE|1|RA|U|50
4TUE|1|RA|G|51
4TUE|1|RA|A|52
4TUE|1|RA|A|53
4TUE|1|RA|G|54
*
4TUE|1|RA|C|116
4TUE|1|RA|G|117
4TUE|1|RA|A|118
4TUE|1|RA|A|119
4TUE|1|RA|U|120
4TUE|1|RA|G|121
*
4TUE|1|RA|C|130
4TUE|1|RA|G|131
*
4TUE|1|RA|C|148
4TUE|1|RA|A|149
4TUE|1|RA|C|150
*
4TUE|1|RA|G|176
4TUE|1|RA|G|177
4TUE|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23