3D structure

PDB id
4U1V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the E. coli ribosome bound to linopristin.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
4U1V|1|BA|U|1758, 4U1V|1|BA|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4U1V_007 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.049
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4U1V|1|BA|G|1674
4U1V|1|BA|C|1675
4U1V|1|BA|A|1676
4U1V|1|BA|A|1677
4U1V|1|BA|A|1678
4U1V|1|BA|A|1679
4U1V|1|BA|U|1680
4U1V|1|BA|G|1681
4U1V|1|BA|G|1682
*
4U1V|1|BA|C|1706
4U1V|1|BA|G|1707
*
4U1V|1|BA|U|1751
4U1V|1|BA|C|1752
*
4U1V|1|BA|G|1756
4U1V|1|BA|A|1757
4U1V|1|BA|U|1758
4U1V|1|BA|A|1759
4U1V|1|BA|C|1760
4U1V|1|BA|C|1761
4U1V|1|BA|A|1762
4U1V|1|BA|G|1763
4U1V|1|BA|C|1764
*
4U1V|1|BA|G|1988
4U1V|1|BA|G|1989
4U1V|1|BA|C|1990

Current chains

Chain BA
23S rRNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BD
50S ribosomal protein L3
Chain BK
50S ribosomal protein L14
Chain BP
50S ribosomal protein L19

Coloring options:


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