J5_4U25_007
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 4U25|1|BA|U|1758, 4U25|1|BA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U25_007 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.0398
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4U25|1|BA|G|1674
4U25|1|BA|C|1675
4U25|1|BA|A|1676
4U25|1|BA|A|1677
4U25|1|BA|A|1678
4U25|1|BA|A|1679
4U25|1|BA|U|1680
4U25|1|BA|G|1681
4U25|1|BA|G|1682
*
4U25|1|BA|C|1706
4U25|1|BA|G|1707
*
4U25|1|BA|U|1751
4U25|1|BA|C|1752
*
4U25|1|BA|G|1756
4U25|1|BA|A|1757
4U25|1|BA|U|1758
4U25|1|BA|A|1759
4U25|1|BA|C|1760
4U25|1|BA|C|1761
4U25|1|BA|A|1762
4U25|1|BA|G|1763
4U25|1|BA|C|1764
*
4U25|1|BA|G|1988
4U25|1|BA|G|1989
4U25|1|BA|C|1990
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- 50S ribosomal protein L3
- Chain BK
- 50S ribosomal protein L14
- Chain BP
- 50S ribosomal protein L19
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